2AK5 | pdb_00002ak5

beta PIX-SH3 complexed with a Cbl-b peptide


Experimental Data Snapshot

  • Method:&nbspX-RAY DIFFRACTION
  • Resolution:&nbsp1.85 Å
  • R-Value Free:&nbsp
    0.269 (Depositor), 0.270 (DCC)&nbsp
  • R-Value Work:&nbsp
    0.227 (Depositor), 0.230 (DCC)&nbsp
  • R-Value Observed:&nbsp
    0.220&nbsp(Depositor)&nbsp

Starting Model: experimental
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wwPDB Validation&nbsp &nbsp3D Report&nbspFull Report


This is version 2.0 of the entry. See complete&nbsphistory.&nbsp


Literature

Cbl promotes clustering of endocytic adaptor proteins.

Jozic, D.,&nbspCardenes, N.,&nbspDeribe, Y.L.,&nbspMoncalian, G.,&nbspHoeller, D.,&nbspGroemping, Y.,&nbspDikic, I.,&nbspRittinger, K.,&nbspBravo, J.

(2005) Nat Struct Mol Biol&nbsp12: 972-979

  • DOI:&nbsphttps://doi.org/10.1038/nsmb1000
  • Primary Citation of Related Structures: &nbsp
    2AK5, 2BZ8

  • PubMed Abstract:&nbsp

    The ubiquitin ligases c-Cbl and Cbl-b play a crucial role in receptor downregulation by mediating multiple monoubiquitination of receptors and promoting their sorting for lysosomal degradation. Their function is modulated through interactions with regulatory proteins including CIN85 and PIX, which recognize a proline-arginine motif in Cbl and thus promote or inhibit receptor endocytosis. We report the structures of SH3 domains of CIN85 and beta-PIX in complex with a proline-arginine peptide from Cbl-b. Both structures reveal a heterotrimeric complex containing two SH3 domains held together by a single peptide. Trimerization also occurs in solution and is facilitated by the pseudo-symmetrical peptide sequence. Moreover, ternary complexes of CIN85 and Cbl are formed in vivo and are important for the ability of Cbl to promote epidermal growth factor receptor (EGFR) downregulation. These results provide molecular explanations for a novel mechanism by which Cbl controls receptor downregulation.


  • Organizational Affiliation:&nbsp

    Division of Protein Structure, National Institute for Medical Research, The Ridgeway, London NW7 1AA, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Rho guanine nucleotide exchange factor 7
A, B
64Rattus norvegicusMutation(s): 0&nbsp
UniProt
Find proteins for&nbspO55043&nbsp(Rattus norvegicus)
Explore&nbspO55043&nbsp
Go to UniProtKB: &nbspO55043
Entity Groups &nbsp
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO55043
Sequence Annotations
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  • Reference Sequence

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
8-residue peptide from a signal transduction protein CBL-BC [auth D]8N/AMutation(s): 0&nbsp
EC:&nbsp2.3.2.27
UniProt & NIH Common Fund Data Resources
Find proteins for&nbspQ13191&nbsp(Homo sapiens)
Explore&nbspQ13191&nbsp
Go to UniProtKB: &nbspQ13191
PHAROS: &nbspQ13191
GTEx: &nbspENSG00000114423&nbsp
Entity Groups &nbsp
UniProt GroupQ13191
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method:&nbspX-RAY DIFFRACTION
  • Resolution:&nbsp1.85 Å
  • R-Value Free:&nbsp 0.269 (Depositor), 0.270 (DCC)&nbsp
  • R-Value Work:&nbsp 0.227 (Depositor), 0.230 (DCC)&nbsp
  • R-Value Observed:&nbsp0.220&nbsp(Depositor)&nbsp
Space Group:&nbspP 32 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 69.338α = 90
b = 69.338β = 90
c = 58.113γ = 120
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing
REFMACrefinement

Structure Validation

View&nbspFull Validation Report



Entry History&nbsp

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2005-10-11
    Type: Initial release
  • Version 1.1: 2008-04-30
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 2.0: 2023-08-23
    Changes: Atomic model, Data collection, Database references, Refinement description