5HHV | pdb_00005hhv

Inhibiting complex IL-17A and IL-17RA interactions with a linear peptide


Experimental Data Snapshot

  • Method:&nbspX-RAY DIFFRACTION
  • Resolution:&nbsp2.20 Å
  • R-Value Free:&nbsp
    0.236 (Depositor), 0.250 (DCC)&nbsp
  • R-Value Work:&nbsp
    0.198 (Depositor), 0.210 (DCC)&nbsp
  • R-Value Observed:&nbsp
    0.200&nbsp(Depositor)&nbsp

Starting Model: experimental
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wwPDB Validation&nbsp &nbsp3D Report&nbspFull Report


This is version 1.3 of the entry. See complete&nbsphistory.&nbsp


Literature

Inhibiting complex IL-17A and IL-17RA interactions with a linear peptide.

Liu, S.,&nbspDesharnais, J.,&nbspSahasrabudhe, P.V.,&nbspJin, P.,&nbspLi, W.,&nbspOates, B.D.,&nbspShanker, S.,&nbspBanker, M.E.,&nbspChrunyk, B.A.,&nbspSong, X.,&nbspFeng, X.,&nbspGriffor, M.,&nbspJimenez, J.,&nbspChen, G.,&nbspTumelty, D.,&nbspBhat, A.,&nbspBradshaw, C.W.,&nbspWoodnutt, G.,&nbspLappe, R.W.,&nbspThorarensen, A.,&nbspQiu, X.,&nbspWithka, J.M.,&nbspWood, L.D.

(2016) Sci Rep&nbsp6: 26071-26071

  • DOI:&nbsphttps://doi.org/10.1038/srep26071
  • Primary Citation of Related Structures: &nbsp
    5HHV, 5HHX

  • PubMed Abstract:&nbsp

    IL-17A is a pro-inflammatory cytokine that has been implicated in autoimmune and inflammatory diseases. Monoclonal antibodies inhibiting IL-17A signaling have demonstrated remarkable efficacy, but an oral therapy is still lacking. A high affinity IL-17A peptide antagonist (HAP) of 15 residues was identified through phage-display screening followed by saturation mutagenesis optimization and amino acid substitutions. HAP binds specifically to IL-17A and inhibits the interaction of the cytokine with its receptor, IL-17RA. Tested in primary human cells, HAP blocked the production of multiple inflammatory cytokines. Crystal structure studies revealed that two HAP molecules bind to one IL-17A dimer symmetrically. The N-terminal portions of HAP form a β-strand that inserts between two IL-17A monomers while the C-terminal section forms an α helix that directly blocks IL-17RA from binding to the same region of IL-17A. This mode of inhibition suggests opportunities for developing peptide antagonists against this challenging target.


  • Organizational Affiliation:&nbsp

    Worldwide Research and Development, Pfizer Inc., Eastern Point Road, Groton, CT 06340 USA.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Interleukin-17A
A, B
123Homo sapiensMutation(s): 2&nbsp
Gene Names:&nbspIL17A,&nbspCTLA8,&nbspIL17
UniProt & NIH Common Fund Data Resources
Find proteins for&nbspQ16552&nbsp(Homo sapiens)
Explore&nbspQ16552&nbsp
Go to UniProtKB: &nbspQ16552
PHAROS: &nbspQ16552
GTEx: &nbspENSG00000112115&nbsp
Entity Groups &nbsp
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ16552
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
CAT-2000 FAB heavy chainC [auth H]237Homo sapiensMutation(s): 0&nbsp
Entity Groups &nbsp
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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  • Reference Sequence

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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
IL-17A peptide inhibitorD [auth I]16synthetic constructMutation(s): 0&nbsp
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Sequence Annotations
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  • Reference Sequence
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
CAT-2000 FAB light chainE [auth L]214Homo sapiensMutation(s): 0&nbsp
Entity Groups &nbsp
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method:&nbspX-RAY DIFFRACTION
  • Resolution:&nbsp2.20 Å
  • R-Value Free:&nbsp 0.236 (Depositor), 0.250 (DCC)&nbsp
  • R-Value Work:&nbsp 0.198 (Depositor), 0.210 (DCC)&nbsp
  • R-Value Observed:&nbsp0.200&nbsp(Depositor)&nbsp
Space Group:&nbspP 3 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 110.2α = 90
b = 110.2β = 90
c = 90.3γ = 120
Software Package:
Software NamePurpose
BUSTERrefinement
autoPROCdata scaling
Aimlessdata scaling
PHASERphasing

Structure Validation

View&nbspFull Validation Report



Entry History&nbsp

Deposition Data

  • Released Date:&nbsp2016-06-01&nbsp
  • Deposition Author(s):&nbspLiu, S.

Revision History  (Full details and data files)

  • Version 1.0: 2016-06-01
    Type: Initial release
  • Version 1.1: 2017-11-22
    Changes: Derived calculations, Refinement description
  • Version 1.2: 2023-09-27
    Changes: Data collection, Database references, Refinement description
  • Version 1.3: 2024-11-20
    Changes: Structure summary